Shadow Lugia

Shadow Lugia (Japanese: ダークルギア Dark Lugia), codenamed XD001, is a Pokémon exclusive to Pokémon XD: Gale of Darkness.

It is a Lugia corrupted by the criminal organization Cipher, believed to be the ultimate Shadow Pokémon and completely immune to purification. As a sign of this corruption, its appearance is different from that of a normal Lugia, unlike other Shadow Pokémon who appear normal but possess a shadowy aura.

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History
Shadow Lugia attacking the S.S. Libra

In the prologue of Pokémon XD: Gale of Darkness, Shadow Lugia attacks the cruise ship S.S. Libra, which had been carrying many Pokémon to Orre. However, Shadow Lugia drops the ship in the middle of the desert, forcing Cipher to travel to the desert and catch the Pokémon left in the ship.

During the course of the game, Shadow Lugia is mentioned often, but never seen. One of Cipher's administrators, Lovrina, tells Michael that it was she who created Shadow Lugia, as the first of an army of Shadow Pokémon immune to purification. She also reveals that the Shadow Pokémon was supposed to bring the S.S. Libra to Cipher's headquarters, but an instability in the corruption process led to it briefly breaking free of Cipher's control.

When Michael explores Citadark Isle, he again encounters Lovrina, who boasts that she has perfected Shadow Lugia, making it completely impossible to purify. Later, at the very pinnacle of Cipher's headquarters, Michael finally confronts the corrupted Lugia when it is sent out by Greevil to defeat the boy before the other six (also Shadow) members of his party.

After snagging the Lugia and defeating Greevil, Michael will find that Lovrina was apparently correct — Shadow Lugia cannot be purified through using it in battle, massaging it with Scents, keeping it in the active party, or by any other normal means. However, the Purify Chamber, the ultimate creation of Michael's father and Professor Krane, will be able to purify Shadow Lugia if all nine of the Sets within it are at maximum tempo.